Visualization of the Phosphoproteomic Data from AfCS with the Google Motion Chart Gadget
Results from multivariate molecular biological experiments become increasingly complex. Hence, the challenge of projecting high-dimensional data onto few dimensions for effective data visualization…
Received 16 April 2009 15:39 UTC; Posted 16 April 2009
Posted to: Biotechnology, Molecular Cell Biology, Bioinformatics
Connecting Seed Lists of Mammalian Proteins Using Steiner Trees
Multivariate experiments and genomics studies applied to mammalian cells often produce lists of genes or proteins altered under treatment/disease vs. control/normal conditions. Such lists can be id…
Received 05 April 2008 20:54 UTC; Posted 07 April 2008
Posted to: Biotechnology, Cancer, Molecular Cell Biology, Bioinformatics
Systems Pharmacology
The slides are from a presentation given by Professor Ravi Iyengar from Mount Sinai School of Medicine at the Drug Forum Meeting #9 that took place in Washington, DC on February 20-21, 2008. The sl…
Received 01 April 2008 16:19 UTC; Posted 02 April 2008
Posted to: Biotechnology, Chemistry, Pharmacology, Bioinformatics
Genes2Networks: Connecting Lists of Proteins by Using Background Literature-based Mammalian Networks
In recent years, in-silico literature-based mammalian protein-protein interaction network datasets have been developed. These datasets contain binary interactions extracted manually from legacy exp…
Received 07 June 2007 15:27 UTC; Posted 08 June 2007
Posted to: Biotechnology, Molecular Cell Biology, Bioinformatics
Intracellular Regulatory Networks are close to Monotone Systems
Several meso-scale biological intracellular regulatory networks that have specified directionality of interactions have been recently assembled from experimental literature. Directed networks where…
Received 23 January 2007 16:57 UTC; Posted 23 January 2007
Posted to: Molecular Cell Biology, Bioinformatics
Dynamic Topology of Biological Networks
The mammalian cell can be represented as a large modular network that consists of a central signal network that interacts with and regulates multiple cellular machines that are responsible for phen…
Received 23 January 2007 16:48 UTC; Posted 23 January 2007
Posted to: Molecular Cell Biology, Neuroscience, Pharmacology, Bioinformatics
