Submissions tagged with ontology
(67 documents)
Aligning the top-level of SNOMED-CT with Basic Formal Ontology
Effective translational research requires automated analysis of large datasets collected by multiple researchers working at multiple locations. Reliable, machine interpretation of-—and reasoning w…
Received 07 October 2008 16:25 UTC; Posted 08 October 2008
Posted to: Bioinformatics
GO faster ChEBI with Reasonable Biochemistry
Chemical Entities of Biological Interest (ChEBI) is a database and ontology that represents biochemical knowledge about small molecules. Recent changes to the ontology have created new opportunitie…
Received 25 September 2008 16:37 UTC; Posted 25 September 2008
Posted to: Biotechnology, Chemistry, Bioinformatics
Natural Language Query in the Biochemistry and Molecular Biology Domains Based on Cognition Search™
Motivation: With the tremendous growth in scientific literature, it is necessary to improve upon the standard pattern matching style of the available search engines. Semantic NLP may be the solutio…
Received 19 September 2008 21:45 UTC; Posted 22 September 2008
Posted to: Bioinformatics
Building and Using Geospatial Ontology in the BioCaster Surveillance System
This abstract presents an approach to building a geospatial ontology from Wikipedia and using it in BioCaster, a system for detecting and tracking infectious disease outbreaks from online news. Mot…
Received 22 July 2008 20:28 UTC; Posted 24 July 2008
Posted to: Bioinformatics
Function, Role, and Disposition in Basic Formal Ontology
Numerous research groups are now utilizing Basic Formal Ontology (BFO) as an upper-level framework to assist in the organization and integration of biomedical information. This paper provides eluci…
Received 02 June 2008 15:27 UTC; Posted 03 June 2008
Posted to: Bioinformatics
GO-WORDS: An Entropic Approach to Semantic Decomposition of Gene Ontology Terms
The Gene Ontology (GO) has a large and growing number of terms that constitute its vocabulary. An entropy-based approach is presented to automate the characterization of the compositional semantics…
Received 31 May 2008 02:43 UTC; Posted 02 June 2008
Posted to: Bioinformatics
Open Standards and Resources in Systems Biology: collaborative scale-up toward virtual life
The practise of Systems Biology relies on interfaces. Interfacesbetween the entities we study: the paradigm moved from a physicalobject centric view toward a relationship-centric one; interface…
Received 30 November 2006 13:26 UTC; Posted 30 November 2006
Posted to: Biotechnology
