Submissions tagged with ontology
(67 documents)
The Gene Ontology’s Reference Genome Project: A Unified Framework for Functional Annotation across Species
Complete functional annotation of genomes is a powerful tool for researchers; however, such annotation is a time-consuming task limited by the availability of experimental data. The function of gen…
Received 22 April 2009 22:47 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
The Gene Ontology Annotation (GOA) Database
The Gene Ontology (GO) is a well-established, structured vocabulary that has been successfully used for 10 years in the annotation of proteins. GO terms, created in consultation with the biology co…
Received 23 April 2009 10:42 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Data submission and curation for caArray, a standard based microarray data repository system
caArray is an open-source, open development, web and programmatically accessible array data management system developed at National Cancer Institute. It was developed to support the exchange of arr…
Received 22 April 2009 14:16 UTC; Posted 22 April 2009
Posted to: Cancer, Bioinformatics
The SOL Genomics Network Model: Making Community Annotation Work
The concept of community annotation is a growing discipline for achieving participation of the research community in depositing up‐to‐date knowledge in biological databases.The Solanaceae Genomic…
Received 22 April 2009 13:21 UTC; Posted 22 April 2009
Posted to: Bioinformatics, Plant Biology
Ontology-based Assisted Curation of Biomedical Data
Manual curation of biomedical data is highly accurate but time consuming, and does not scale with the ever increasing growth of biomedical literature. Text mining as a high-throughput computational…
Received 22 April 2009 10:34 UTC; Posted 22 April 2009
Posted to: Bioinformatics
An Ontology To Represent Knowledge On Animal Testing Alternatives
EU Directive 86/609/EEC for the protection of laboratory animals obliges scientists to consider whether a planned animal experiment can be replaced, reduced or refined (3Rs principle). To meet this…
Received 22 April 2009 19:48 UTC; Posted 22 April 2009
Posted to: Bioinformatics
ChlamyCyc – a comprehensive database and web-portal centered on Chlamydomonas reinhardtii
Background – The unicellular green alga Chlamydomonas reinhardtii is an important eukaryotic model organism for the study of photosynthesis and growth, as well as flagella development and other…
Received 20 April 2009 23:01 UTC; Posted 21 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Plant Biology
Development of GCP Ontology for Sharing Crop Information
The Generation Challenge Programme (GCP – http://www.generationcp.org) is a globally distributed crop research consortium directed toward crop improvement through the …
Received 19 April 2009 10:02 UTC; Posted 20 April 2009
Posted to: Bioinformatics, Plant Biology
The Undertheorized Environment: Sociological Insights for Behavioral Genetics
Dr. Andrew Perrin discussed the ontological claims and social theory which run beneath ideas of genetic causation of behavioral traits. He outlined five criteria for evaluating and conceptualizing…
Received 13 December 2008 01:30 UTC; Posted 15 December 2008
Posted to: Genetics & Genomics
Relation Ontology II
Conceived as follow-up to recent efforts destined to supply .owl ontologies with relational tools of greater complexity, the present article focuses on four main paths, all of them consisting in pr…
Received 05 November 2008 21:06 UTC; Posted 06 November 2008
Posted to: Bioinformatics
