Submissions tagged with ontology
(67 documents)
Towards an Ontological Representation of Resistance: The Case of MRSa
This paper addresses a family of issues surrounding the biological phenomenon of resistance and its representation in realist ontologies. Resistance terms from various existing ontologies are exami…
Received 27 July 2009 19:12 UTC; Posted 27 July 2009
Posted to: Bioinformatics
Towards an Ontological Representation of Resistance: The Case of MRSa
This paper addresses a family of issues surrounding the biological phenomenon of resistance and its representation in realist ontologies. Resistance terms from various existing ontologies are exami…
Received 27 July 2009 19:08 UTC; Posted 27 July 2009
Posted to: Bioinformatics
LexOWL: A Bridge from LexGrid to OWL
The Lexical Grid project is an on-going community driven initiative that provides a common terminology model to represent multiple vocabulary and ontology sources as well as a scalable and robust A…
Received 27 July 2009 14:21 UTC; Posted 27 July 2009
Posted to: Bioinformatics
LexOWL: A Bridge from LexGrid to OWL
The Lexical Grid project is an on-going community driven initiative that provides a common terminology model to represent multiple vocabulary and ontology sources as well as a scalable and robust A…
Received 27 July 2009 14:25 UTC; Posted 27 July 2009
Posted to: Bioinformatics
Annotation of SBML Models Through Rule-Based Semantic Integration
Motivation: The creation of accurate quantitative Systems Biology Markup Language (SBML) models is a time-intensive, manual process often complicated by the many data sources and formats required…
Received 26 May 2009 13:27 UTC; Posted 29 May 2009
Posted to: Bioinformatics
An evolutionary approach to Function
The distinction between function and role is a vexed and difficult one. While the distinction appears to be useful, in practice it is hard to apply; this can be even worse when applying this distin…
Received 07 May 2009 11:34 UTC; Posted 11 May 2009
Posted to: Bioinformatics
Developing ontologies in decentralised settings
This paper addresses two research questions: “How should a well-engineered methodology facilitate the development of ontologies within communities of practice?” and “What methodology should be used…
Received 08 May 2009 07:51 UTC; Posted 08 May 2009
Posted to: Bioinformatics
Grid technology for collaborative ontology development
In contrast with the centrally-organised curation of the Gene Ontology, many biological ontologies are developed by loosely-organised groups who develop their ontology remotely. These groups tend t…
Received 27 April 2009 19:36 UTC; Posted 27 April 2009
Posted to: Bioinformatics
Protein Ontology and Community Curation
The Protein Ontology (PRO) is designed as a formal and well-principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from the classification of protei…
Received 24 April 2009 12:34 UTC; Posted 24 April 2009
Posted to: Molecular Cell Biology, Bioinformatics
Immunogenetic sequence annotation based on IMGT-ONTOLOGY
IMGT/LIGM-DB1 is the first and the largest IMGT® database2 in which are managed, analysed and annotated more than 136,000 immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences fro…
Received 24 April 2009 09:18 UTC; Posted 24 April 2009
Posted to: Genetics & Genomics, Immunology, Bioinformatics
