Submissions tagged with ontology
(67 documents)
Phenoscape: Ontologies for Large Multi-species Phenotype Datasets
The Phenoscape project is developing ontologies and tools to integrate morphological and genomic data to address comparative questions in evolutionary biology. We are currently curating 81 publicat…
Received 13 August 2009 17:52 UTC; Posted 14 August 2009
Posted to: Bioinformatics, Evolutionary Biology
Open Biomedical Ontologies Applied to Prostate Cancer
In this presentation we survey preliminary results from the Interdisciplinary Prostate Ontology Project (IPOP), in which ontologies from the Open Biomedical Ontologies (OBO) library have been used …
Received 10 August 2009 21:16 UTC; Posted 12 August 2009
Posted to: Cancer, Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:47 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:57 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
Developing a Mammalian Behaviour Ontology
The use of the Entity + Quality (EQ) model in phenotypic descriptions is dependent on the use of specialised domain ontologies to define the entity under observation. A domain currently lacking a …
Received 06 August 2009 13:43 UTC; Posted 07 August 2009
Posted to: Bioinformatics
Open Biomedical Ontologies Applied to Prostate Cancer
This paper surveys preliminary results from the Interdisciplinary Prostate Ontology Project (IPOP), in which ontologies from the Open Biomedical Ontologies (OBO) library have been used to annotate …
Received 06 August 2009 20:09 UTC; Posted 07 August 2009
Posted to: Cancer, Bioinformatics
Using the Gene Ontology to Annotate Biomedical Journal Articles
We are creating a gold-standard corpus of manually annotated full-text biomedical journal articles toward natural-language-processing applications. Central to this is our use of entire ontologies …
Received 05 August 2009 22:44 UTC; Posted 06 August 2009
Posted to: Bioinformatics
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Biomedical Ontologies are intended to integrate diverse biomedical data to enable intelligent data-mining and facilitate translation of basic research into useful clinical knowledge. We present the…
Received 06 August 2009 10:49 UTC; Posted 06 August 2009
Posted to: Chemistry, Genetics & Genomics, Bioinformatics
The Evolution Ontology
Existing ontologies model components of evolution, but none synthesize them or describe the framework of ideas used to conceptualize evolution. The Evolution Ontology (EO) aims to do just this. EO …
Received 06 August 2009 03:40 UTC; Posted 06 August 2009
Posted to: Ecology, Bioinformatics, Evolutionary Biology
Multiple Ontologies for Integrating Complex Phenotype Datasets
There has been an emergence of multiple large scale phenotyping projects in the rat model organism community as well as renewed interest in the ongoing phenotype data generated by thousands of rese…
Received 05 August 2009 19:08 UTC; Posted 05 August 2009
Posted to: Genetics & Genomics, Bioinformatics
