Submissions tagged with ontology
(23 documents)
Annotation of SBML Models Through Rule-Based Semantic Integration
Motivation: The creation of accurate quantitative Systems Biology Markup Language (SBML) models is a time-intensive, manual process often complicated by the many data sources and formats required…
Received 26 May 2009 13:12 GMT; Posted 29 May 2009
Posted to: Bioinformatics
An evolutionary approach to Function
The distinction between function and role is a vexed and difficult one. While the distinction appears to be useful, in practice it is hard to apply; this can be even worse when applying this distin…
Received 07 May 2009 11:30 GMT; Posted 11 May 2009
Posted to: Bioinformatics
Developing ontologies in decentralised settings
This paper addresses two research questions: “How should a well-engineered methodology facilitate the development of ontologies within communities of practice?” and “What methodology should be used…
Received 08 May 2009 07:36 GMT; Posted 08 May 2009
Posted to: Bioinformatics
Grid technology for collaborative ontology development
In contrast with the centrally-organised curation of the Gene Ontology, many biological ontologies are developed by loosely-organised groups who develop their ontology remotely. These groups tend t…
Received 27 April 2009 19:26 GMT; Posted 27 April 2009
Posted to: Bioinformatics
Protein Ontology and Community Curation
The Protein Ontology (PRO) is designed as a formal and well-principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from the classification of protei…
Received 24 April 2009 12:16 GMT; Posted 24 April 2009
Posted to: Molecular Cell Biology, Bioinformatics
Immunogenetic sequence annotation based on IMGT-ONTOLOGY
IMGT/LIGM-DB1 is the first and the largest IMGT® database2 in which are managed, analysed and annotated more than 136,000 immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences fro…
Received 24 April 2009 08:15 GMT; Posted 24 April 2009
Posted to: Genetics & Genomics, Immunology, Bioinformatics
The Gene Ontology’s Reference Genome Project: A Unified Framework for Functional Annotation across Species
Complete functional annotation of genomes is a powerful tool for researchers; however, such annotation is a time-consuming task limited by the availability of experimental data. The function of gen…
Received 22 April 2009 22:44 GMT; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
The Gene Ontology Annotation (GOA) Database
The Gene Ontology (GO) is a well-established, structured vocabulary that has been successfully used for 10 years in the annotation of proteins. GO terms, created in consultation with the biology co…
Received 23 April 2009 10:26 GMT; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Data submission and curation for caArray, a standard based microarray data repository system
caArray is an open-source, open development, web and programmatically accessible array data management system developed at National Cancer Institute. It was developed to support the exchange of arr…
Received 22 April 2009 14:11 GMT; Posted 22 April 2009
Posted to: Cancer, Bioinformatics
The SOL Genomics Network Model: Making Community Annotation Work
The concept of community annotation is a growing discipline for achieving participation of the research community in depositing up‐to‐date knowledge in biological databases.The Solanaceae Genomic…
Received 22 April 2009 13:00 GMT; Posted 22 April 2009
Posted to: Bioinformatics, Plant Biology
