Submissions tagged with ontology
(66 documents)
Virtual Fly Brain: An ontology-linked schema of the Drosophila Brain
Drosophila neuro-anatomical data is scattered across a large, diverse literature dating back over 75 years and a growing number of community databases. Lack of a standardized nomenclature for neuro…
Received 17 November 2009 10:39 UTC; Posted 17 November 2009
Posted to: Neuroscience, Bioinformatics
Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates
The developers of the Ontology of Biomedical Investigations (OBI) primarily use Protégé for editing. However, adding many classes with similar patterns of logical definition is time consuming, erro…
Received 12 November 2009 11:08 UTC; Posted 16 November 2009
Posted to: Bioinformatics
Evaluation of the Cell Ontology (CL)
An ontological representation of the entities relevant to biological research is urgently needed. The cell ontology developed by Bard and colleagues (CL) (Bard et al. 2005) makes a significant con…
Received 12 November 2009 11:30 UTC; Posted 12 November 2009
Posted to: Bioinformatics
BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse
BioPortal (http://bioportal.bioontology.org) is an open repository of biomedical ontologies that provides programmatic and web-based access to ontologies develope…
Received 16 October 2009 10:08 UTC; Posted 16 October 2009
Posted to: Bioinformatics
Developing an application ontology for annotation of experimental variables – Experimental Factor Ontology
The Experimental Factor Ontology (www.ebi.ac.uk/efo) is an application focused ontology modelling the experimental factors in ArrayExpress. The ontology has been develope…
Received 25 September 2009 21:09 UTC; Posted 25 September 2009
Posted to: Bioinformatics
ChemAxiom – An Ontological Framework for Chemistry in Science
We present ChemAxiom as the first ontological framework for chemistry in science. ChemAxiom enables discourse about chemical objects in a computable language and is useful for the management of che…
Received 03 September 2009 11:23 UTC; Posted 03 September 2009
Posted to: Chemistry, Bioinformatics
Creating a Translational Medicine Ontology
AbstractWe, participants in the Translational Medicine Ontology activity of the World Wide Web Consortium’s Health Care and Life Sciences Interest Group (http://esw.w3.org/topic/HCLSIG...
Received 24 August 2009 19:59 UTC; Posted 26 August 2009
Posted to: Developmental Biology, Genetics & Genomics, Immunology, Molecular Cell Biology, Neuroscience, Pharmacology, Bioinformatics
Ontology for Biomedical Investigations
The goal of OBI is to enable a formal representation of biomedical investigations that captures the experimental evidence on which their findings are based. The scope of OBI includes: materials mad…
Received 16 August 2009 19:50 UTC; Posted 17 August 2009
Posted to: Biotechnology, Bioinformatics
Using Ontology Fingerprints to evaluate genome-wide association study results
We describe an approach to characterize genes or phenotypes via ontology fingerprints which are composed of Gene Ontology (GO) terms overrepresented among those PubMed abstracts linked to the genes…
Received 14 August 2009 20:36 UTC; Posted 14 August 2009
Posted to: Genetics & Genomics, Bioinformatics
Phenoscape: Ontologies for Large Multi-species Phenotype Datasets
The Phenoscape project is developing ontologies and tools to integrate morphological and genomic data to address comparative questions in evolutionary biology. We are currently curating 81 publicat…
Received 13 August 2009 17:52 UTC; Posted 14 August 2009
Posted to: Bioinformatics, Evolutionary Biology
