Submissions tagged with ontologies
(19 documents)
Standardization in UniProtKB/Swiss-Prot
Within the UniProt consortium, the UniProtKB/Swiss-Prot knowledge base provides the international community with a stable, comprehensive, fully classified, richly and accurately annotated protein s…
Received 04 May 2009 09:41 UTC; Posted 08 May 2009
Posted to: Bioinformatics
Developing ontologies in decentralised settings
This paper addresses two research questions: “How should a well-engineered methodology facilitate the development of ontologies within communities of practice?” and “What methodology should be used…
Received 08 May 2009 07:51 UTC; Posted 08 May 2009
Posted to: Bioinformatics
Standards and infrastructure for managing experimental metadata
See also related posterToday’s researchers can perform biological and biomedical studies where the same material is run through a wide …
Received 22 April 2009 18:19 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Standards and infrastructure for managing experimental metadata
See also the related presentationWe present an infrastructure that leverages synergistic reporting standards and ontologies1,2,3,4,5 ...
Received 22 April 2009 18:02 UTC; Posted 22 April 2009
Posted to: Bioinformatics
Beyond Structure: KiSAO and TEDDY—Two Ontologies Addressing Pragmatical and Dynamical Aspects of Computational Models in Systems Biology
Computational models are becoming more and more the central scientific paradigm for understanding the complexity of living systems. With the increasing number and size of these models there is a gr…
Received 22 April 2009 13:57 UTC; Posted 22 April 2009
Posted to: Molecular Cell Biology, Bioinformatics
Cardiovascular Gene Ontology Annotation Initiative
Gene Ontology (GO) provides a controlled vocabulary, which is used by several groups around the world to provide functional annotation to proteins across a wide range of species (“www.geneontology….
Received 22 April 2009 13:32 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Terminizer – Assisting Mark-Up of Text Using Ontological Terms
We present a tool that automatically detects ontological terms in free text. Once candidate terms have been identified the results are displayed either overlaid on the original text or in a list or…
Received 22 April 2009 11:53 UTC; Posted 22 April 2009
Posted to: Bioinformatics
Ontology-based Assisted Curation of Biomedical Data
Manual curation of biomedical data is highly accurate but time consuming, and does not scale with the ever increasing growth of biomedical literature. Text mining as a high-throughput computational…
Received 22 April 2009 10:34 UTC; Posted 22 April 2009
Posted to: Bioinformatics
PharmGKB: Capturing knowledge to catalyze pharmacogenomics research
This is a powerpoint presentation made initially at the Cold Spring Harbor meeting on Pharmacogenomics, November 2006. It discusses the PharmGKB (http://www.pharmgkb.org/) and how we are building …
Received 30 November 2006 07:29 UTC; Posted 30 November 2006
Posted to: Biotechnology, Genetics & Genomics, Pharmacology
