Submissions tagged with ontologies
(19 documents)
The NCBO OBOF to OWL Mapping
Two of the most significant formats for biomedical ontologies are the Open Biomedical Ontologies Format (OBOF) and the Web Ontology Language (OWL). To make it possible to translate ontologies betwe…
Received 03 November 2009 20:16 UTC; Posted 04 November 2009
Posted to: Bioinformatics
The Role of Bio-Ontologies in Data-Driven Research: A Philosophical Perspective
This project aims to reach a philosophical understanding of the role played by theory in the practices of data dissemination and re-use that characterise data-driven research. Bio-ontologies have t…
Received 18 August 2009 12:42 UTC; Posted 18 August 2009
Posted to: Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:47 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:57 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
Metarel: an Ontology to support the inferencing of Semantic Web relations within Biomedical Ontologies
While OWL, the Web Ontology Language, is often regarded as the preferred language for Knowledge Representation in the world of the Semantic Web, the potential of direct representation in RDF, the R…
Received 06 August 2009 11:55 UTC; Posted 06 August 2009
Posted to: Genetics & Genomics, Bioinformatics
Generating Homology Relationships by Alignment of Anatomical Ontologies
The anatomy of model species is described in ontologies, which are used to standardize the annotations of experimental data, such as gene expression patterns. To compare such data between species, ...
Received 04 August 2009 12:44 UTC; Posted 05 August 2009
Posted to: Bioinformatics
Towards Context Driven Modularization of Large Biomedical Ontologies
Formal knowledge about human anatomy, radiology or diseases is necessary to support clinical applications such as medical image search. This machine processable knowledge can be acquired from biome…
Received 30 July 2009 16:26 UTC; Posted 30 July 2009
Posted to: Bioinformatics
Towards Context Driven Modularization of Large Biomedical Ontologies
Formal knowledge about human anatomy, radiology or diseases is necessary to support clinical applications such as medical image search. This machine processable knowledge can be acquired from biome…
Received 30 July 2009 16:45 UTC; Posted 30 July 2009
Posted to: Bioinformatics
Dynamic is-a Hierarchy Generation from a Clinical Medical Ontology
This article discusses an ontology-handling technology to provide on-demand reorganization of is-a hierarchy of diseases instead of one fixed hierarchy to cope with various viewpoints which physici…
Received 29 July 2009 07:27 UTC; Posted 29 July 2009
Posted to: Bioinformatics
Development of Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation and Integration of Event-related Brain Potentials
We describe a first-generation ontology forrepresentation and integration of event-related brain potentials (ERPs). The ontology is designed following OBO “best practices” and is augmented with t…
Received 24 July 2009 20:22 UTC; Posted 24 July 2009
Posted to: Neuroscience, Bioinformatics
