Submissions tagged with modelling
(9 documents)
Systems Biology Graphical Notation: Activity Flow language Level 1
Standard graphical representations have played a crucial role in science and engineering throughout the last century. Without electrical symbolism, it is very likely that our industrial society wou…
Received 05 September 2009 03:20 UTC; Posted 07 September 2009
Posted to: Bioinformatics
Measurement & Prediction of Phase Behaviour of Carbon Dioxide Mixtures
Acquiring a comprehensive understanding of the behaviour of carbon dioxide under reservoir conditions is essential for optimizing its usage in enhanced oil recovery (EOR) and for developing sequest…
Received 12 December 2008 17:09 UTC; Posted 12 December 2008
Posted to: Chemistry, Earth & Environment
The Systems Biology Markup Language (SBML): Where It’s Been and Where It’s Going
A cornerstone of systems biology is the use of computational modeling, by which hypotheses can be cast into a quantitative form that can be tested systematically. The use of computational modeling…
Received 22 January 2007 04:39 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net
Systems biology has arisen through the convergence of theoretical, computational, and mathematical modeling of systems and the need to understand the wealth of information being rapidly generated i…
Received 22 January 2007 04:29 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
The Systems Biology Markup Language (SBML) Level 2 Version 2
The Systems Biology Markup Language (SBML) is a machine-readable model representation language for software tools in computational systems biology. By supporting SBML as an input/output format, dif…
Received 22 January 2007 04:01 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Environmental modelling and Web 2.0 – using Connotea to share XML-represented information
Much academic information can be represented in a structured way and published on the web as XML documents. Such information can then be displayed in a wide variety of ways, using different XSLT …
Received 20 January 2007 14:42 UTC; Posted 20 January 2007
Posted to: Ecology, Bioinformatics, Earth & Environment
Declarative modelling in the ecological and environmental sciences
Most simulation models in ecological and environmental research are implemented as computer programs in a conventional programming language. This brief paper argues for a radically different appr…
Received 19 January 2007 23:15 UTC; Posted 20 January 2007
Posted to: Ecology, Earth & Environment
Open Standards and Resources in Systems Biology: collaborative scale-up toward virtual life
The practise of Systems Biology relies on interfaces. Interfacesbetween the entities we study: the paradigm moved from a physicalobject centric view toward a relationship-centric one; interface…
Received 30 November 2006 13:26 UTC; Posted 30 November 2006
Posted to: Biotechnology
DARPP-32 is a robust integrator of dopamine and glutamate signals
Integration of neurotransmitter and neuromodulator signals in the striatum plays a central role in the functions and dysfunctions of the basal ganglia. DARPP-32 is a key actor of this integration i…
Received 30 November 2006 13:14 UTC; Posted 30 November 2006
Posted to: Neuroscience
