Submissions tagged with modeling
(16 documents)
Obtaining New Insights for Biodiversity Conservation from Broad-Scale Citizen Science Data
Increasing public engagement in volunteer science1, either through data collection2 or processing3, is both raising public awareness of science and gathering useful information for scientists. Whi…
Received 10 November 2009 15:56 UTC; Posted 13 November 2009
Posted to: Ecology
Prediction of Evolutionarily important catalytic amino acid of Mycobacterium tuberculosis O-Succinylbenzoate synthase through in silico mutational analysis
The emergence of tuberculosis resistant to multiple, first- and second-line antibiotics poses challenges to a global control strategy that relies on standard drug treatment regimens. The high drug-...
Received 17 September 2009 10:51 UTC; Posted 18 September 2009
Posted to: Biotechnology, Microbiology, Pharmacology, Bioinformatics
Systems Biology Graphical Notation: Process Description language Level 1
Standard graphical representations have played a crucial role in science and engineering throughout the last century. Without electrical symbolism, it is very likely that our industrial society wou…
Received 04 September 2009 22:59 UTC; Posted 07 September 2009
Posted to: Biotechnology, Bioinformatics
Systems Biology Graphical Notation: Entity Relationship language Level 1
Standard graphical representations have played a crucial role in science and engineering throughout the last century. Without electrical symbolism, it is very likely that our industrial society wou…
Received 04 September 2009 07:09 UTC; Posted 04 September 2009
Posted to: Bioinformatics
Integration of microbial communities into large-scale ecosystem models
Background/Question/MethodsMicro-organisms, including Bacteria, Archaea, and Fungi, control major processes throughout the Earth system. Recent advances in microbial ecology and microbiology ha…
Received 17 August 2009 16:00 UTC; Posted 17 August 2009
Posted to: Ecology, Earth & Environment
An Ontology for Designing Models of Epidemics
Models of epidemics allow decision makers to explore the consequences of different interventions. The Models of Infectious Disease Agent Study (MIDAS) project has been collecting studies, models, d…
Received 05 August 2009 21:50 UTC; Posted 07 August 2009
Posted to: Immunology, Bioinformatics
In silico analysis for the presence of HARDY an Arabidopsis drought tolerance DNA binding transcription factor product in chromosome 6 of Sorghum bicolor genome
Expression of the Arabidopsis HARDY (hrd) DNA binding transcription factor (555 bp present on chromosome 2) has been shown to increase WUE in rice by Karaba et al 2007 (PNAS, 104:15270–15275). We c…
Received 18 July 2009 04:04 UTC; Posted 20 July 2009
Posted to: Bioinformatics
Studying Biocuration Workflows
As the first phase of a knowledge engineering study of biocuration workflows, we performed a preliminary task-modeling exercise on seven separate bioinformatics systems. This involved constructing …
Received 13 May 2009 17:48 UTC; Posted 14 May 2009
Posted to: Bioinformatics
BioCatalogue: A Curated Web Service Registry For The Life Science Community
Web Services have gained a momentum as a means for packaging existing data and computational resources in a form that is amenable for use and composition by third party applications. The life scien…
Received 22 April 2009 12:59 UTC; Posted 22 April 2009
Posted to: Bioinformatics
Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions
With the rise of Systems Biology as a new paradigm for understanding biological processes, the development of quantitative models is no longer restricted to a small circle of theoreticians. The dra…
Received 24 December 2008 09:21 UTC; Posted 24 December 2008
Posted to: Bioinformatics
