Submissions tagged with genome
(6 documents)
GENCODE: Creating a Validated Manually Annotated Geneset for the Whole Human Genome
The Human and Vertebrate Analysis and Annotation (HAVANA) group at the Wellcome Trust Sanger Institute produced the manually annotated geneset for the Encyclopedia of DNA Elements (ENCODE) pilot pr…
Received 23 April 2009 10:51 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
SGN Database: From QTLs to Genomes
Quantitative trait loci (QTL) analysis is used to dissect the genetic basis underlying polygenic traits. Several public databases have been storing and making QTL data available to research communi…
Received 23 April 2009 14:11 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Plant Biology
The SOL Genomics Network Model: Making Community Annotation Work
The concept of community annotation is a growing discipline for achieving participation of the research community in depositing up‐to‐date knowledge in biological databases.The Solanaceae Genomic…
Received 22 April 2009 13:21 UTC; Posted 22 April 2009
Posted to: Bioinformatics, Plant Biology
Analysis of DNA structure as a 2D random walk by complex wavelet transform
We propose the original method of the time-scale wavelet analysis of DNA sequence represented as a 2D walk on a complex plane. Namely, we consider the mapping of two irreducible A − T and G − C se…
Received 24 December 2007 15:14 UTC; Posted 28 December 2007
Posted to: Genetics & Genomics, Bioinformatics
A periodic pattern of SNPs in the human genome
By surveying all validated SNPs in the human genome we have found that SNPs positioned 1, 2, 4, 6 or 8 bp apart are more frequent than SNPs 3, 5, 7 or 9 bp apart. This holds even when we correct fo…
Received 12 July 2007 07:49 UTC; Posted 13 July 2007
Posted to: Genetics & Genomics
Third-codon transversion rate-based Nymphaea basal angiosperm phylogeny—concordance with developmental evidence
Flowering plants (angiosperms) appeared on Earth rather suddenly approximately 130 million years ago and underwent a massive expansion in the subsequent 10-12 million years. Current molecular phylo…
Received 02 July 2007 13:10 UTC; Posted 02 July 2007
Posted to: Ecology, Plant Biology, Evolutionary Biology
