Submissions tagged with gene ontology
(21 documents)
The Gene Ontology’s Reference Genome Project: A Unified Framework for Functional Annotation across Species
Complete functional annotation of genomes is a powerful tool for researchers; however, such annotation is a time-consuming task limited by the availability of experimental data. The function of gen…
Received 22 April 2009 22:47 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
The Gene Ontology Annotation (GOA) Database
The Gene Ontology (GO) is a well-established, structured vocabulary that has been successfully used for 10 years in the annotation of proteins. GO terms, created in consultation with the biology co…
Received 23 April 2009 10:42 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Cardiovascular Gene Ontology Annotation Initiative
Gene Ontology (GO) provides a controlled vocabulary, which is used by several groups around the world to provide functional annotation to proteins across a wide range of species (“www.geneontology….
Received 22 April 2009 13:32 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics
P-POD, The Princeton Protein Orthology Database, as a Tool for Identifying Gene Function
P-POD, the Princeton Protein Orthology Database, classifies proteins from model organisms and medically-important organisms into families of homologs and provides curated evidence from the literatu…
Received 21 April 2009 15:24 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Evolutionary Biology
Community curation on WikiPathways: How we assist knowledge collection
Biologists typically use knowledge represented as pathways to better understand the results of genomics experiments. Through integration of data from different omics techniques with what we already…
Received 21 April 2009 12:26 UTC; Posted 21 April 2009
Posted to: Genetics & Genomics, Bioinformatics
GO faster ChEBI with Reasonable Biochemistry
Chemical Entities of Biological Interest (ChEBI) [1] is a database and ontology that represents knowledge about more than 15,000 small molecules and their biochemistry. The database does not curren…
Received 24 October 2008 10:06 UTC; Posted 24 October 2008
Posted to: Bioinformatics
GO faster ChEBI with Reasonable Biochemistry
Chemical Entities of Biological Interest (ChEBI) is a database and ontology that represents biochemical knowledge about small molecules. Recent changes to the ontology have created new opportunitie…
Received 25 September 2008 16:37 UTC; Posted 25 September 2008
Posted to: Biotechnology, Chemistry, Bioinformatics
ESG: Extended Similarity Group method for automated protein function prediction
We present here the Extended Similarity Group (ESG) method, which annotates query sequences with Gene Ontology (GO) terms by assigning probability to each annotation computed based on iterative PSI…
Received 15 August 2008 14:35 UTC; Posted 15 August 2008
Posted to: Biotechnology, Ecology, Bioinformatics
Ontology (Science)
Increasingly, in data-intensive areas of the life sciences, experimental results are being described in algorithmically useful ways with the help of ontologies. Such ontologies are authored and mai…
Received 15 July 2008 19:58 UTC; Posted 16 July 2008
Posted to: Bioinformatics
GO-WORDS: An Entropic Approach to Semantic Decomposition of Gene Ontology Terms
The Gene Ontology (GO) has a large and growing number of terms that constitute its vocabulary. An entropy-based approach is presented to automate the characterization of the compositional semantics…
Received 31 May 2008 02:43 UTC; Posted 02 June 2008
Posted to: Bioinformatics
