Submissions tagged with database
(39 documents)
P-POD, The Princeton Protein Orthology Database, as a Tool for Identifying Gene Function
P-POD, the Princeton Protein Orthology Database, classifies proteins from model organisms and medically-important organisms into families of homologs and provides curated evidence from the literatu…
Received 21 April 2009 15:24 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Evolutionary Biology
PDBWiki
Background: The success of community projects such as Wikipedia has recently prompted a discussion about the applicability of such tools in the life sciences. However, there is currently no conse…
Received 22 April 2009 11:07 UTC; Posted 22 April 2009
Posted to: Bioinformatics
Evidence attribution in the UniProt Knowledgebase
UniProtKB provides the scientific community with a comprehensive collection of protein sequence records containing extensive curated information including functional and sequence annotation. This i…
Received 22 April 2009 11:57 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics
ChlamyCyc – a comprehensive database and web-portal centered on Chlamydomonas reinhardtii
Background – The unicellular green alga Chlamydomonas reinhardtii is an important eukaryotic model organism for the study of photosynthesis and growth, as well as flagella development and other…
Received 20 April 2009 23:01 UTC; Posted 21 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Plant Biology
The Jena Library of Biological Macromolecules – JenaLib
The JenaLib database (www.fli-leibniz.de/IMAGE.html) offers value-added information for all Protein Data Bank (PDB) and Nucleic Acid Database (NDB) entries. T…
Received 21 April 2009 06:27 UTC; Posted 21 April 2009
Posted to: Bioinformatics
SABIO-RK: Curated Kinetic Data of Biochemical Reactions
SABIO-RK (http://sabio.villa-bosch.de/SABIORK/) is a curated, web-accessible database for modellers and wet-lab scientists to get comprehensive information ab…
Received 19 April 2009 08:15 UTC; Posted 20 April 2009
Posted to: Chemistry, Bioinformatics
Design and Implementation of the UniProt Website
The UniProt consortium is the main provider of protein sequence and annotation data for much of the life sciences community. The www.uniprot.org website is the primary acce…
Received 06 December 2008 02:21 UTC; Posted 08 December 2008
Posted to: Bioinformatics
Visualising a scientific article
This paper describes my entry in the Elsevier Grand Challenge “Knowledge Enhancement in the Life Sciences” contest. The entry takes a collection of fulltext issues of _Molecular Phylogenetics and …
Received 28 November 2008 16:15 UTC; Posted 28 November 2008
Posted to: Ecology, Bioinformatics
STRING and STITCH: known and predicted interactions between proteins and chemicals
Information on protein-protein and protein-chemical interactions is essential for understanding cellular functions. The STRING and STITCH web resources integrate interaction evidence derived from p…
Received 06 September 2008 20:37 UTC; Posted 08 September 2008
Posted to: Bioinformatics
PID: The Pathway Interaction Database
The Pathway Interaction Database (PID, http://pid.nci.nih.gov) is a freely available collection of curated and peer-reviewed pathways composed of human molecular signaling …
Received 29 August 2008 01:06 UTC; Posted 29 August 2008
Posted to: Cancer, Molecular Cell Biology, Bioinformatics
