Submissions tagged with database
(39 documents)
Annotation-based meta-analysis of microarray experiments
We are developing software applications to perform meta-analysis of microarray experiments based on standardized experiment annotations aiming to identify similar experiments and cluster experiment…
Received 06 August 2009 19:26 UTC; Posted 06 August 2009
Posted to: Bioinformatics
Extending the Foundational Model of Anatomy with Automatically Acquired Spatial Relations
Formal ontologies have made significant impact in bioscience over the last ten years. Among them, the Foundational Model of Anatomy Ontology (FMA) is the most comprehensive model for the spatio-str…
Received 27 July 2009 16:01 UTC; Posted 27 July 2009
Posted to: Bioinformatics
Providing a Realist Perspective on the eyeGENE Database System
One of the achievements of the eyeGENE Network is a repository of DNA samples of patients with inherited eye diseases and an associated database that tracks key elements of phenotype and genotype i…
Received 27 July 2009 18:28 UTC; Posted 27 July 2009
Posted to: Bioinformatics
GUDMAP – An Online GenitoUrinary Resource
The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with gene expression data and tools to facil…
Received 29 May 2009 13:53 UTC; Posted 30 May 2009
Posted to: Developmental Biology, Genetics & Genomics, Bioinformatics
Literature Triage and Indexing in the Mouse Genome Informatics (MGI) Group
The Mouse Genome Informatics (MGI; http://www.informatics.jax.org) group is comprised of several collaborating projects including the Mouse Genome Database (MGD) Pr…
Received 13 May 2009 16:01 UTC; Posted 14 May 2009
Posted to: Cancer, Developmental Biology, Genetics & Genomics, Immunology, Molecular Cell Biology, Neuroscience, Bioinformatics
Cancer Biology Data Curation at the Mouse Tumor Biology Database (MTB)
Many advances in the field of cancer biology have been made using mouse models of human cancer. The Mouse Tumor Biology (MTB, http://tumor.informatics.jax.org) da…
Received 13 May 2009 15:27 UTC; Posted 13 May 2009
Posted to: Cancer, Genetics & Genomics, Bioinformatics
IUPHAR-DB: An Expert-Curated, Peer-Reviewed Database of Receptors and Ion Channels
The International Union of Basic and Clinical Pharmacology database (IUPHAR-DB) integrates peer-reviewed pharmacological, chemical, genetic, functional and anatomical information on the 354 non-sen…
Received 07 May 2009 15:50 UTC; Posted 07 May 2009
Posted to: Pharmacology, Bioinformatics
The GABI Primary Database: GABIPD – Integration of Plant ‘Omics’-Data in Gene Context
GabiPD (http://www.gabipd.org/) at the Max Planck Institute of Molecular Plant Physiology constitutes a repository and analysis platform of genomic, transcriptomic, proteom…
Received 04 May 2009 16:15 UTC; Posted 06 May 2009
Posted to: Genetics & Genomics, Bioinformatics, Plant Biology
Protein Ontology and Community Curation
The Protein Ontology (PRO) is designed as a formal and well-principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from the classification of protei…
Received 24 April 2009 12:34 UTC; Posted 24 April 2009
Posted to: Molecular Cell Biology, Bioinformatics
Curation of NISEED, an integrative framework for the digital representation of embryonic development
NISEED (Network for In situ Expression and Embryological Data) is a generic infrastructure for the creation, maintenance and integration of molecular and anatomical information on model organisms. ...
Received 24 April 2009 09:22 UTC; Posted 24 April 2009
Posted to: Developmental Biology, Genetics & Genomics, Bioinformatics
