Submissions tagged with curation
(30 documents)
Bringing Text Miners and Biologists Closer Together
The boosting of Biomedical Text Mining (BioTM) research in the last few years has led the way for finally bridging out the gap between text miners and biologists. Beyond the development of enhanced…
Received 27 April 2009 21:29 UTC; Posted 28 April 2009
Posted to: Bioinformatics
GOAssay: from Gene Ontology to Assays IDentifiers – Towards Automatic Functional Annotation of PubChem BioAssays
OBJECTIVES: We report on a experiment to functionally annotate PubChem assays using the Gene Ontology Categorizer (GOCat). METHODS and MATERIALS: The assays are processed to filter out non func…
Received 24 April 2009 20:48 UTC; Posted 28 April 2009
Posted to: Chemistry, Genetics & Genomics, Bioinformatics
Challenges in Whole-Genome Annotation of Pyrosequenced Fungal Genomes
Pyrosequencing technologies such as 454/Roche and Solexa/Illumina vastly lower the cost of nucleotide sequencing compared to the traditional Sanger method, and thus promise to greatly expand the nu…
Received 28 April 2009 02:30 UTC; Posted 28 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Earth & Environment
Grid technology for collaborative ontology development
In contrast with the centrally-organised curation of the Gene Ontology, many biological ontologies are developed by loosely-organised groups who develop their ontology remotely. These groups tend t…
Received 27 April 2009 19:36 UTC; Posted 27 April 2009
Posted to: Bioinformatics
UIMA in the Biocuration Workflow: A coherent framework for cooperation between biologists and computational linguists
As collaborating partners, Barcelona Media Innovation Centre and GRIB (Universitat Pompeu Fabra) seek to combine strengths from Computational Linguistics and Biomedicine to produce a robust Text Mi…
Received 24 April 2009 16:05 UTC; Posted 24 April 2009
Posted to: Bioinformatics
Expert Assertions Through Community Annotation Jamborees
Although there is significant optimism that community involvement can drive genome curation, results to date are disappointing. The Human Genome and Saccharomyces Genome Databases both tried commun…
Received 24 April 2009 15:33 UTC; Posted 24 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Protein Ontology and Community Curation
The Protein Ontology (PRO) is designed as a formal and well-principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from the classification of protei…
Received 24 April 2009 12:34 UTC; Posted 24 April 2009
Posted to: Molecular Cell Biology, Bioinformatics
Curation of NISEED, an integrative framework for the digital representation of embryonic development
NISEED (Network for In situ Expression and Embryological Data) is a generic infrastructure for the creation, maintenance and integration of molecular and anatomical information on model organisms. ...
Received 24 April 2009 09:22 UTC; Posted 24 April 2009
Posted to: Developmental Biology, Genetics & Genomics, Bioinformatics
Increasing Access To Bioinformatics Resources: Increase Community Curation by Increasing Your Community
The amount of biological data has risen exponentially over the last decade. Along with this rise, the number and types of bioinformatics resources has risen such that the sheer number of bioinforma…
Received 23 April 2009 19:00 UTC; Posted 24 April 2009
Posted to: Biotechnology, Cancer, Genetics & Genomics, Molecular Cell Biology, Bioinformatics
Worm Annotation in the UniProt Knowledgebase (UniProtKB)
The nematode worm, Caenorhabditis elegans, was the first multicellular organism to be sequenced. Its genome was published in 1998, providing an impetus for gene and protein annotation. Recently, ...
Received 23 April 2009 11:47 UTC; Posted 23 April 2009
Posted to: Bioinformatics
