Submissions tagged with curation
(30 documents)
The Eukaryote Genome Annotation Platform at Genoscope
The Genoscope annotation workflow for eukaryote genomes relies on evidence from ab initio gene models predictions combined with homology searches, using collections of expressed sequences – full le…
Received 24 July 2009 13:05 UTC; Posted 24 July 2009
Posted to: Genetics & Genomics, Bioinformatics
Online Training of New Curators
The basic information in Reactome is provided by bench biologists who are experts on a particular pathway, the Reactome Team is always working hard to drive engagement. This engagement between expe…
Received 10 July 2009 19:14 UTC; Posted 13 July 2009
Posted to: Bioinformatics
Using Textpresso for Information Retrieval, Fact Extraction
Ten years ago WormBase1 started as a repository for sequence data for the modelorganism Caenorhabditis elegans and has since striven to include the curation of allgenetic and molecular data p…
Received 01 June 2009 17:44 UTC; Posted 02 June 2009
Posted to: Genetics & Genomics, Bioinformatics
Integrating Text Mining into the MGI Biocuration Workflow
A major challenge for the development of resources for functional and comparative genomics is the extraction of data from the biomedical literature. Although text retrieval and extraction for biol…
Received 20 May 2009 11:36 UTC; Posted 20 May 2009
Posted to: Bioinformatics
Data Curation in Biology – Past, Present and Future
Data curation has been critical in the development of biology from Darwin and Linnaeus to UniProt, the careful collection and organisation of data has been the spring from which new hypotheses and …
Received 06 May 2009 08:51 UTC; Posted 12 May 2009
Posted to: Genetics & Genomics, Molecular Cell Biology, Bioinformatics
Present and future of proteomics data curation at the PRIDE database
Significant progress has been made in improving the accessibility and utility of the large amounts of generated high-throughput proteomics data by the introduction of publicly available proteomics …
Received 05 May 2009 17:45 UTC; Posted 06 May 2009
Posted to: Biotechnology, Bioinformatics
DDBJ Activities: Contribution to the Research in Information Biology
DDBJ (DNA Data Bank of Japan; http://www.ddbj.nig.ac.jp/ its database activities in 1986. From the beginning, DDBJ has been one of INSDC (International Nucleoti…
Received 01 May 2009 07:33 UTC; Posted 06 May 2009
Posted to: Genetics & Genomics, Bioinformatics
Reflect: Augmented Browsing for the Life Scientist
Anyone who regularly reads life science literature often comes across names of genes, proteins, or small molecules that they would like to know more about. To make this process easier, we have deve…
Received 02 May 2009 01:44 UTC; Posted 04 May 2009
Posted to: Biotechnology, Chemistry, Genetics & Genomics, Molecular Cell Biology, Bioinformatics
Curating Genetic Association Literature for Common Diseases
Papers describing genetic associations with common diseases are currently being published at a rapid rate. These new papers add to an already large body of literature which includes candidate gene …
Received 24 April 2009 17:57 UTC; Posted 28 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Broadening Pfam Protein Sequence Annotations
Pfam is a database of conserved protein families or domains commonly used for genome annotation and sequence classification. It comprises two parts: (1) Pfam-A families, which are fully annotated a…
Received 28 April 2009 13:26 UTC; Posted 28 April 2009
Posted to: Bioinformatics
