Submissions tagged with biocuration
(51 documents)
A Framework for BioCuration Workflows (part II)
This is the second part of the talk ‘A Framework for BioCuration Workflows’, given by Martin Krallinger from the Spanish National Cancer Research Centre at the ‘Text Mining for the BioCuration Work…
Received 22 April 2009 11:21 UTC; Posted 22 April 2009
Posted to: Bioinformatics
Ontology-based Assisted Curation of Biomedical Data
Manual curation of biomedical data is highly accurate but time consuming, and does not scale with the ever increasing growth of biomedical literature. Text mining as a high-throughput computational…
Received 22 April 2009 10:34 UTC; Posted 22 April 2009
Posted to: Bioinformatics
P-POD, The Princeton Protein Orthology Database, as a Tool for Identifying Gene Function
P-POD, the Princeton Protein Orthology Database, classifies proteins from model organisms and medically-important organisms into families of homologs and provides curated evidence from the literatu…
Received 21 April 2009 15:24 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Evolutionary Biology
PDBWiki
Background: The success of community projects such as Wikipedia has recently prompted a discussion about the applicability of such tools in the life sciences. However, there is currently no conse…
Received 22 April 2009 11:07 UTC; Posted 22 April 2009
Posted to: Bioinformatics
Capturing Protein Sequence Data: UniProt Knowledgebase (UniProtKB) submissions and Journal Scanning
Most sequences in UniprotKB are derived from the translation of nucleotide sequence, but we also add sequences obtained through direct sequencing of peptides by Edman degradation and tandem mass sp…
Received 21 April 2009 16:47 UTC; Posted 22 April 2009
Posted to: Molecular Cell Biology, Bioinformatics
Curation and annotation for BioModels Database, a resource of published quantitative kinetic models
BioModels Database (http://www.ebi.ac.uk/biomodels/) is a free resource for storing, viewing and retrieving published, peer-reviewed, quantitative models of bioche…
Received 22 April 2009 10:55 UTC; Posted 22 April 2009
Posted to: Bioinformatics
ChlamyCyc – a comprehensive database and web-portal centered on Chlamydomonas reinhardtii
Background – The unicellular green alga Chlamydomonas reinhardtii is an important eukaryotic model organism for the study of photosynthesis and growth, as well as flagella development and other…
Received 20 April 2009 23:01 UTC; Posted 21 April 2009
Posted to: Genetics & Genomics, Bioinformatics, Plant Biology
Community curation on WikiPathways: How we assist knowledge collection
Biologists typically use knowledge represented as pathways to better understand the results of genomics experiments. Through integration of data from different omics techniques with what we already…
Received 21 April 2009 12:26 UTC; Posted 21 April 2009
Posted to: Genetics & Genomics, Bioinformatics
The future of annotation/biocuration
Talk given at 3rd International Biocuration Conference. Berlin 2009
Received 20 April 2009 07:48 UTC; Posted 21 April 2009
Posted to: Bioinformatics
SABIO-RK: Curated Kinetic Data of Biochemical Reactions
SABIO-RK (http://sabio.villa-bosch.de/SABIORK/) is a curated, web-accessible database for modellers and wet-lab scientists to get comprehensive information ab…
Received 19 April 2009 08:15 UTC; Posted 20 April 2009
Posted to: Chemistry, Bioinformatics
