Submissions tagged with annotation
(32 documents)
Annotation-based meta-analysis of microarray experiments
We are developing software applications to perform meta-analysis of microarray experiments based on standardized experiment annotations aiming to identify similar experiments and cluster experiment…
Received 06 August 2009 19:26 UTC; Posted 06 August 2009
Posted to: Bioinformatics
Using the Gene Ontology to Annotate Biomedical Journal Articles
We are creating a gold-standard corpus of manually annotated full-text biomedical journal articles toward natural-language-processing applications. Central to this is our use of entire ontologies …
Received 05 August 2009 22:44 UTC; Posted 06 August 2009
Posted to: Bioinformatics
Desiderata for an ontology of diseases for the annotation of biological datasets.
There is a plethora of disease ontologies available, all potentially useful for the annotation of biological datasets. We define seven desirable features for such ontologies and examine whether or …
Received 01 August 2009 18:39 UTC; Posted 03 August 2009
Posted to: Bioinformatics
The Eukaryote Genome Annotation Platform at Genoscope
The Genoscope annotation workflow for eukaryote genomes relies on evidence from ab initio gene models predictions combined with homology searches, using collections of expressed sequences – full le…
Received 24 July 2009 13:05 UTC; Posted 24 July 2009
Posted to: Genetics & Genomics, Bioinformatics
A simple clustering of the BioModels database using semanticSBML
The BioModels database contains biochemical network models in SBML format, in which the biochemical meaning of elements is specified by MIRIAM-compliant RDF annotations. We used these annotations t…
Received 20 July 2009 15:09 UTC; Posted 20 July 2009
Posted to: Bioinformatics
BrainGrab: Capturing Curator Expertise as Reusable Annotation Rules
Experienced biocurators can outperform automated systems on specific genes once they determine which pieces of evidence should drive annotation, and which annotations should be spread. The annotati…
Received 03 June 2009 15:35 UTC; Posted 03 June 2009
Posted to: Genetics & Genomics, Microbiology, Bioinformatics
GUDMAP – An Online GenitoUrinary Resource
The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with gene expression data and tools to facil…
Received 29 May 2009 13:53 UTC; Posted 30 May 2009
Posted to: Developmental Biology, Genetics & Genomics, Bioinformatics
H-InvDB release 6, a comprehensive annotation resource for human genes and transcripts
H-Invitational Database (H-InvDB; http://www.h-invitational.jp/) is an integrated database of human genes and transcripts. By extensive analyses of all human transcr…
Received 14 May 2009 02:31 UTC; Posted 14 May 2009
Posted to: Genetics & Genomics, Bioinformatics, Evolutionary Biology
Data Curation in Biology – Past, Present and Future
Data curation has been critical in the development of biology from Darwin and Linnaeus to UniProt, the careful collection and organisation of data has been the spring from which new hypotheses and …
Received 06 May 2009 08:51 UTC; Posted 12 May 2009
Posted to: Genetics & Genomics, Molecular Cell Biology, Bioinformatics
Automatisation in UniProtKB / Swiss-Prot Annotation: New Rules and Tools
The development of next generation sequencing technologies promises a massive increase in the rate of submission of new protein sequences to sequence databases such as the Universal Protein Resourc…
Received 04 May 2009 11:27 UTC; Posted 08 May 2009
Posted to: Bioinformatics
