Submissions tagged with algorithm
(4 documents)
Generating Homology Relationships by Alignment of Anatomical Ontologies
The anatomy of model species is described in ontologies, which are used to standardize the annotations of experimental data, such as gene expression patterns. To compare such data between species, ...
Received 04 August 2009 12:54 UTC; Posted 04 August 2009
Posted to: Bioinformatics
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamentalrequirement in present-day biology. Similarities can be present at various levels which can…
Received 21 November 2008 08:59 UTC; Posted 21 November 2008
Posted to: Bioinformatics
Treemap Versus BPA (Again): A Response to Dowling
TreeMap is a computer program for analysing host-parasite cospeciation. We respond to Dowling’s (Cladistics, 18: 416-435) recent comparison of TreeMap and Brooks Parsimony Analysis (BPA) by showing…
Received 18 September 2007 09:09 UTC; Posted 18 September 2007
Posted to: Bioinformatics, Evolutionary Biology
New checksum functions for Biopython
Checksum algorithms are used in biological databases for integrity check and identification purposes. CRC64 is the only checksum algorithm already included in Biopython. This work proposes two new …
Received 28 June 2007 02:42 UTC; Posted 28 June 2007
Posted to: Bioinformatics
