Submissions tagged with XML
(6 documents)
XML in Motion from Genome to Drug
Information technology (IT) has emerged as a central to the solution of contemporary genomics and drug discovery problems. Researchers involved in genomics, proteomics, transcriptional profiling, h...
Received 28 June 2007 13:33 GMT; Posted 28 June 2007
Posted to: Chemistry, Bioinformatics
The Systems Biology Markup Language (SBML): Where It’s Been and Where It’s Going
A cornerstone of systems biology is the use of computational modeling, by which hypotheses can be cast into a quantitative form that can be tested systematically. The use of computational modeling...
Received 22 January 2007 04:39 GMT; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net
Systems biology has arisen through the convergence of theoretical, computational, and mathematical modeling of systems and the need to understand the wealth of information being rapidly generated i...
Received 22 January 2007 04:29 GMT; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
The Systems Biology Markup Language (SBML) Level 2 Version 2
The Systems Biology Markup Language (SBML) is a machine-readable model representation language for software tools in computational systems biology. By supporting SBML as an input/output format, dif...
Received 22 January 2007 04:01 GMT; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Environmental modelling and Web 2.0 – using Connotea to share XML-represented information
Much academic information can be represented in a structured way and published on the web as XML documents. Such information can then be displayed in a wide variety of ways, using different XSLT ...
Received 20 January 2007 14:42 GMT; Posted 20 January 2007
Posted to: Evolution and Ecology, Bioinformatics, Earth and Environment
Declarative modelling in the ecological and environmental sciences
Most simulation models in ecological and environmental research are implemented as computer programs in a conventional programming language. This brief paper argues for a radically different appr...
Received 19 January 2007 23:15 GMT; Posted 20 January 2007
Posted to: Evolution and Ecology, Earth and Environment