Submissions tagged with SBML
(11 documents)
Curation and annotation for BioModels Database, a resource of published quantitative kinetic models
BioModels Database (http://www.ebi.ac.uk/biomodels/) is a free resource for storing, viewing and retrieving published, peer-reviewed, quantitative models of bioche…
Received 22 April 2009 10:55 UTC; Posted 22 April 2009
Posted to: Bioinformatics
SemanticSBML: a tool for annotating, checking, and merging of biochemical models in SBML format
Semantic annotations in SBML (systems biology markup language) enable computer programs to check and process biochemical models based on their biochemical meaning. Annotations are an important prer…
Received 20 April 2009 09:47 UTC; Posted 20 April 2009
Posted to: Bioinformatics
SABIO-RK: Curated Kinetic Data of Biochemical Reactions
SABIO-RK (http://sabio.villa-bosch.de/SABIORK/) is a curated, web-accessible database for modellers and wet-lab scientists to get comprehensive information ab…
Received 19 April 2009 08:15 UTC; Posted 20 April 2009
Posted to: Chemistry, Bioinformatics
Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions
With the rise of Systems Biology as a new paradigm for understanding biological processes, the development of quantitative models is no longer restricted to a small circle of theoreticians. The dra…
Received 24 December 2008 09:21 UTC; Posted 24 December 2008
Posted to: Bioinformatics
Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions
With the rise of Systems Biology as a new paradigm for understanding biological processes, the development of quantitative models is no longer restricted to a small circle of theoreticians. The dra…
Received 26 October 2007 08:21 UTC; Posted 05 November 2007
Posted to: Bioinformatics
Reactome – a knowledgebase of human biological pathways
Pathway curation is a powerful tool for systematically associating gene products with functions. Reactome (www.reactome.org) is a manually curated human pathway knowledgebase describing a wide rang…
Received 30 October 2007 20:56 UTC; Posted 31 October 2007
Posted to: Molecular Cell Biology, Bioinformatics
The Systems Biology Markup Language (SBML): Where It’s Been and Where It’s Going
A cornerstone of systems biology is the use of computational modeling, by which hypotheses can be cast into a quantitative form that can be tested systematically. The use of computational modeling…
Received 22 January 2007 04:39 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net
Systems biology has arisen through the convergence of theoretical, computational, and mathematical modeling of systems and the need to understand the wealth of information being rapidly generated i…
Received 22 January 2007 04:29 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
The Systems Biology Markup Language (SBML) Level 2 Version 2
The Systems Biology Markup Language (SBML) is a machine-readable model representation language for software tools in computational systems biology. By supporting SBML as an input/output format, dif…
Received 22 January 2007 04:01 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Environmental modelling and Web 2.0 – using Connotea to share XML-represented information
Much academic information can be represented in a structured way and published on the web as XML documents. Such information can then be displayed in a wide variety of ways, using different XSLT …
Received 20 January 2007 14:42 UTC; Posted 20 January 2007
Posted to: Ecology, Bioinformatics, Earth & Environment
