Submissions tagged with OBO Foundry
(11 documents)
The NCBO OBOF to OWL Mapping
Two of the most significant formats for biomedical ontologies are the Open Biomedical Ontologies Format (OBOF) and the Web Ontology Language (OWL). To make it possible to translate ontologies betwe…
Received 03 November 2009 20:16 UTC; Posted 04 November 2009
Posted to: Bioinformatics
BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse
BioPortal (http://bioportal.bioontology.org) is an open repository of biomedical ontologies that provides programmatic and web-based access to ontologies develope…
Received 16 October 2009 10:08 UTC; Posted 16 October 2009
Posted to: Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:47 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:57 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
Cross-Product Extensions of the Gene Ontology
The Gene Ontology is being normalized and extended to include computable logical definitions. These definitions are partitioned into mutually exclusive cross-product sets, many of which reference o…
Received 28 July 2009 21:38 UTC; Posted 29 July 2009
Posted to: Genetics & Genomics, Bioinformatics
Evolution of the Sequence Ontology terms and relationships
The Sequence Ontology is undergoing reform to meet the standards of the OBO Foundry. Here we report some of the incremental changes and improvements made to SO. We also propose new relationships to…
Received 28 July 2009 21:10 UTC; Posted 29 July 2009
Posted to: Bioinformatics
Protein Ontology and Community Curation
The Protein Ontology (PRO) is designed as a formal and well-principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from the classification of protei…
Received 24 April 2009 12:34 UTC; Posted 24 April 2009
Posted to: Molecular Cell Biology, Bioinformatics
Standards and infrastructure for managing experimental metadata
See also related posterToday’s researchers can perform biological and biomedical studies where the same material is run through a wide …
Received 22 April 2009 18:19 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Standards and infrastructure for managing experimental metadata
See also the related presentationWe present an infrastructure that leverages synergistic reporting standards and ontologies1,2,3,4,5 ...
Received 22 April 2009 18:02 UTC; Posted 22 April 2009
Posted to: Bioinformatics
Terminizer – Assisting Mark-Up of Text Using Ontological Terms
We present a tool that automatically detects ontological terms in free text. Once candidate terms have been identified the results are displayed either overlaid on the original text or in a list or…
Received 22 April 2009 11:53 UTC; Posted 22 April 2009
Posted to: Bioinformatics
