Submissions tagged with OBI
(8 documents)
Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates
The developers of the Ontology of Biomedical Investigations (OBI) primarily use Protégé for editing. However, adding many classes with similar patterns of logical definition is time consuming, erro…
Received 12 November 2009 11:08 UTC; Posted 16 November 2009
Posted to: Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:47 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
MIREOT: the Minimum Information to Reference an External Ontology Term
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have work…
Received 07 August 2009 20:57 UTC; Posted 10 August 2009
Posted to: Biotechnology, Bioinformatics
VO: Vaccine Ontology
Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expressi…
Received 05 August 2009 15:27 UTC; Posted 05 August 2009
Posted to: Biotechnology, Immunology, Microbiology, Bioinformatics
An Ontology-Based Framework for Clinical Research Databases
The Ontology-Based eXtensible data model (OBX) was developed to serve as a framework for the development of a clinical research database in the Immunology Database and Analysis Portal (ImmPort) sys…
Received 27 July 2009 22:48 UTC; Posted 28 July 2009
Posted to: Bioinformatics
Developing ontologies in decentralised settings
This paper addresses two research questions: “How should a well-engineered methodology facilitate the development of ontologies within communities of practice?” and “What methodology should be used…
Received 08 May 2009 07:51 UTC; Posted 08 May 2009
Posted to: Bioinformatics
Standards and infrastructure for managing experimental metadata
See also related posterToday’s researchers can perform biological and biomedical studies where the same material is run through a wide …
Received 22 April 2009 18:19 UTC; Posted 22 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Standards and infrastructure for managing experimental metadata
See also the related presentationWe present an infrastructure that leverages synergistic reporting standards and ontologies1,2,3,4,5 ...
Received 22 April 2009 18:02 UTC; Posted 22 April 2009
Posted to: Bioinformatics
