Submissions tagged with GO
(14 documents)
The NCBO OBOF to OWL Mapping
Two of the most significant formats for biomedical ontologies are the Open Biomedical Ontologies Format (OBOF) and the Web Ontology Language (OWL). To make it possible to translate ontologies betwe…
Received 03 November 2009 20:16 UTC; Posted 04 November 2009
Posted to: Bioinformatics
Development of an Ontology of Microbial Phenotypes (OMP)
AbstractPhenotypic data are routinely used to elucidate gene and protein function in most organisms amenable to experimental manipulation. However, although phenotype ontologies exist for many …
Received 17 August 2009 22:31 UTC; Posted 19 August 2009
Posted to: Microbiology, Bioinformatics
Integrating Text Mining into the MGI Biocuration Workflow
A major challenge for the development of resources for functional and comparative genomics is the extraction of data from the biomedical literature. Although text retrieval and extraction for biol…
Received 20 May 2009 11:36 UTC; Posted 20 May 2009
Posted to: Bioinformatics
Standardization in UniProtKB/Swiss-Prot
Within the UniProt consortium, the UniProtKB/Swiss-Prot knowledge base provides the international community with a stable, comprehensive, fully classified, richly and accurately annotated protein s…
Received 04 May 2009 09:41 UTC; Posted 08 May 2009
Posted to: Bioinformatics
The GABI Primary Database: GABIPD – Integration of Plant ‘Omics’-Data in Gene Context
GabiPD (http://www.gabipd.org/) at the Max Planck Institute of Molecular Plant Physiology constitutes a repository and analysis platform of genomic, transcriptomic, proteom…
Received 04 May 2009 16:15 UTC; Posted 06 May 2009
Posted to: Genetics & Genomics, Bioinformatics, Plant Biology
Reactome – a knowledgebase of human biological pathways
Reactome (http://www.reactome.org) is an expert-authored, peer-reviewed knowledgebase of human reactions and pathways that functions as a data mining resource and electron…
Received 29 April 2009 09:05 UTC; Posted 03 May 2009
Posted to: Chemistry, Genetics & Genomics, Immunology, Molecular Cell Biology, Bioinformatics
GOAssay: from Gene Ontology to Assays IDentifiers – Towards Automatic Functional Annotation of PubChem BioAssays
OBJECTIVES: We report on a experiment to functionally annotate PubChem assays using the Gene Ontology Categorizer (GOCat). METHODS and MATERIALS: The assays are processed to filter out non func…
Received 24 April 2009 20:48 UTC; Posted 28 April 2009
Posted to: Chemistry, Genetics & Genomics, Bioinformatics
Grid technology for collaborative ontology development
In contrast with the centrally-organised curation of the Gene Ontology, many biological ontologies are developed by loosely-organised groups who develop their ontology remotely. These groups tend t…
Received 27 April 2009 19:36 UTC; Posted 27 April 2009
Posted to: Bioinformatics
The Gene Ontology’s Reference Genome Project: A Unified Framework for Functional Annotation across Species
Complete functional annotation of genomes is a powerful tool for researchers; however, such annotation is a time-consuming task limited by the availability of experimental data. The function of gen…
Received 22 April 2009 22:47 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
The Gene Ontology Annotation (GOA) Database
The Gene Ontology (GO) is a well-established, structured vocabulary that has been successfully used for 10 years in the annotation of proteins. GO terms, created in consultation with the biology co…
Received 23 April 2009 10:42 UTC; Posted 23 April 2009
Posted to: Genetics & Genomics, Bioinformatics
