Submissions tagged with Data integration
(8 documents)
The Cell Cycle Ontology: an application ontology supporting the study of cell cycle control
The Cell Cycle Ontology (CCO) is an application ontology that automatically captures and integrates detailed knowledge on the cell cycle process by combining, interlinking and enriching knowledge f…
Received 06 August 2009 12:53 UTC; Posted 07 August 2009
Posted to: Genetics & Genomics, Bioinformatics
Metarel: an Ontology to support the inferencing of Semantic Web relations within Biomedical Ontologies
While OWL, the Web Ontology Language, is often regarded as the preferred language for Knowledge Representation in the world of the Semantic Web, the potential of direct representation in RDF, the R…
Received 06 August 2009 11:55 UTC; Posted 06 August 2009
Posted to: Genetics & Genomics, Bioinformatics
Normalization and Matching of Chemical Compound Names
The identification of a chemical compound solely based on its name requires comprehensive chemical knowledge and often extensive searches in chemical databases. However, it is crucial for the integ…
Received 04 June 2009 16:05 UTC; Posted 05 June 2009
Posted to: Chemistry, Bioinformatics
Annotation of SBML Models Through Rule-Based Semantic Integration
Motivation: The creation of accurate quantitative Systems Biology Markup Language (SBML) models is a time-intensive, manual process often complicated by the many data sources and formats required…
Received 26 May 2009 13:27 UTC; Posted 29 May 2009
Posted to: Bioinformatics
UniProt in RDF: Tackling Data Integration and Distributed Annotation with the Semantic Web
The UniProt knowledgebase (UniProtKB) is a comprehensive repository of protein sequence and annotation data. We collect information from the scientific literature and other databases and provide li…
Received 28 April 2009 13:14 UTC; Posted 28 April 2009
Posted to: Bioinformatics
Visualising a scientific article
This paper describes my entry in the Elsevier Grand Challenge “Knowledge Enhancement in the Life Sciences” contest. The entry takes a collection of fulltext issues of _Molecular Phylogenetics and …
Received 28 November 2008 16:15 UTC; Posted 28 November 2008
Posted to: Ecology, Bioinformatics
Towards realising Darwin’s dream: setting the trees free
The fact that all living organisms are related by common descent is one of the central principles of modern biology. Since the early 1990’s the amount of data available to evolutionary biologists …
Received 21 August 2008 20:29 UTC; Posted 22 August 2008
Posted to: Ecology, Bioinformatics
Alignment of Linear Biochemical Pathways Using Protein Structural Classification
Metabolic, signaling and regulatory pathways form the basis of biological processes and are important for the analysis of cellular behavior and evolution. This paper presents an approach of alignin…
Received 03 June 2008 16:22 UTC; Posted 03 June 2008
Posted to: Bioinformatics
