Submissions tagged with Data Mining
(8 documents)
BRAGOMAP – a new Perl script for high throughoutput blast results analysis including GO and MapMan automatic annotations
Analyzing of sequences similarities is the first and most important method used to find out the function of unknown nucleotides. Searching of homologs should be done carefully not to loose any impo…
Received 25 October 2009 19:49 UTC; Posted 26 October 2009
Posted to: Genetics & Genomics, Bioinformatics, Plant Biology
Reactome – a knowledgebase of human biological pathways
Reactome (http://www.reactome.org) is an expert-authored, peer-reviewed knowledgebase of human reactions and pathways that functions as a data mining resource and electron…
Received 29 April 2009 09:05 UTC; Posted 03 May 2009
Posted to: Chemistry, Genetics & Genomics, Immunology, Molecular Cell Biology, Bioinformatics
HGNC: The Why and How of Standardised Gene Nomenclature
The HUGO Gene Nomenclature Committee (HGNC) aims to approve a unique gene symbol and gene name for every human gene. Standardisation of gene symbols is necessary to allow researchers and curators …
Received 27 April 2009 11:12 UTC; Posted 28 April 2009
Posted to: Genetics & Genomics, Bioinformatics
Visualising a scientific article
This paper describes my entry in the Elsevier Grand Challenge “Knowledge Enhancement in the Life Sciences” contest. The entry takes a collection of fulltext issues of _Molecular Phylogenetics and …
Received 28 November 2008 16:15 UTC; Posted 28 November 2008
Posted to: Ecology, Bioinformatics
Embedding machine-readable proteins interactions data in scientific articles for easy access and retrieval
Extraction of protein-protein interactions data from scientific literature remains a hard, time- and resource-consuming task. This task would be greatly simplified by embedding in the source, i.e. ...
Received 29 September 2008 14:22 UTC; Posted 01 October 2008
Posted to: Bioinformatics
Towards realising Darwin’s dream: setting the trees free
The fact that all living organisms are related by common descent is one of the central principles of modern biology. Since the early 1990’s the amount of data available to evolutionary biologists …
Received 21 August 2008 20:29 UTC; Posted 22 August 2008
Posted to: Ecology, Bioinformatics
Data mining of protein families using common peptides
Predicting the function of a protein from its sequence is typically addressed using sequence-similarity. Here we propose a motif-based approach, using supervised motif extraction from protein seque…
Received 14 August 2008 08:55 UTC; Posted 14 August 2008
Posted to: Bioinformatics
Web 2.0 and the ever elusive balance between information explosion and data mining
In a fascinating tussle of perspectives in Volume 6 and issue no 3 of april 2008 Frontiers in Ecology and Evolution, Martin A Nuñez and Gregory M Crustinger enlist ways to brace up with the recent …
Received 09 June 2008 18:56 UTC; Posted 11 June 2008
Posted to: Ecology, Bioinformatics, Earth & Environment
