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Genes2Networks: Connecting Lists of Proteins by Using Background Literature-based Mammalian Networks
In recent years, in-silico literature-based mammalian protein-protein interaction network datasets have been developed. These datasets contain binary interactions extracted manually from legacy exp…
Received 07 June 2007 15:27 UTC; Posted 08 June 2007
Posted to: Biotechnology, Molecular Cell Biology, Bioinformatics
The Systems Biology Markup Language (SBML): Where It’s Been and Where It’s Going
A cornerstone of systems biology is the use of computational modeling, by which hypotheses can be cast into a quantitative form that can be tested systematically. The use of computational modeling…
Received 22 January 2007 04:39 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net
Systems biology has arisen through the convergence of theoretical, computational, and mathematical modeling of systems and the need to understand the wealth of information being rapidly generated i…
Received 22 January 2007 04:29 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
The Systems Biology Markup Language (SBML) Level 2 Version 2
The Systems Biology Markup Language (SBML) is a machine-readable model representation language for software tools in computational systems biology. By supporting SBML as an input/output format, dif…
Received 22 January 2007 04:01 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Open Standards and Resources in Systems Biology: collaborative scale-up toward virtual life
The practise of Systems Biology relies on interfaces. Interfacesbetween the entities we study: the paradigm moved from a physicalobject centric view toward a relationship-centric one; interface…
Received 30 November 2006 13:26 UTC; Posted 30 November 2006
Posted to: Biotechnology
PharmGKB: Capturing knowledge to catalyze pharmacogenomics research
This is a powerpoint presentation made initially at the Cold Spring Harbor meeting on Pharmacogenomics, November 2006. It discusses the PharmGKB (http://www.pharmgkb.org/) and how we are building …
Received 30 November 2006 07:29 UTC; Posted 30 November 2006
Posted to: Biotechnology, Genetics & Genomics, Pharmacology
