Latest Presentations
Specificity and Evolvability in Eukaryotic Protein Interaction Networks
Progress in uncovering the protein interaction networks of several species has led to questions of what underlying principles might govern their organization. Few studies have tried to determine th…
Received 28 February 2007 20:11 UTC; Posted 02 March 2007
Posted to: Bioinformatics, Evolutionary Biology
Dynamic Topology of Biological Networks
The mammalian cell can be represented as a large modular network that consists of a central signal network that interacts with and regulates multiple cellular machines that are responsible for phen…
Received 23 January 2007 16:48 UTC; Posted 23 January 2007
Posted to: Molecular Cell Biology, Neuroscience, Pharmacology, Bioinformatics
LipidMaps Core Update
LipidMaps (http://www.lipidmaps.org) is a multidisciplinary project involving multiple institutions. The goal of this project is to identify lipid metabolites and reconstruct pathways associated wi…
Received 23 January 2007 05:57 UTC; Posted 23 January 2007
Posted to: Bioinformatics
The Systems Biology Markup Language (SBML): Where It’s Been and Where It’s Going
A cornerstone of systems biology is the use of computational modeling, by which hypotheses can be cast into a quantitative form that can be tested systematically. The use of computational modeling…
Received 22 January 2007 04:39 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net
Systems biology has arisen through the convergence of theoretical, computational, and mathematical modeling of systems and the need to understand the wealth of information being rapidly generated i…
Received 22 January 2007 04:29 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
The Systems Biology Markup Language (SBML) Level 2 Version 2
The Systems Biology Markup Language (SBML) is a machine-readable model representation language for software tools in computational systems biology. By supporting SBML as an input/output format, dif…
Received 22 January 2007 04:01 UTC; Posted 22 January 2007
Posted to: Biotechnology, Bioinformatics
Environmental modelling and Web 2.0 – using Connotea to share XML-represented information
Much academic information can be represented in a structured way and published on the web as XML documents. Such information can then be displayed in a wide variety of ways, using different XSLT …
Received 20 January 2007 14:42 UTC; Posted 20 January 2007
Posted to: Ecology, Bioinformatics, Earth & Environment
Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions
Protein interaction networks are an important part of the post-genomic effort to integrate a part-list view of the cell into system-level understanding. Using a set of 11 yeast genomes we show that…
Received 19 January 2007 11:36 UTC; Posted 19 January 2007
Posted to: Ecology, Bioinformatics, Evolutionary Biology
Bioinformatics Approach for Functional Glycomics
Presentation in the Human Glycomics Proteomics Disease Initiative (HGPI) session.
Received 18 January 2007 05:55 UTC; Posted 18 January 2007
Posted to: Molecular Cell Biology, Bioinformatics
Developments in CFG glycan and pathogen polysaccharide arrays
This presentation summarizes developments in glycan and pathogen polysaccharide arrays at the Consortium for Functional Glycomics (CFG).
Received 15 January 2007 21:14 UTC; Posted 16 January 2007
Posted to: Chemistry, Molecular Cell Biology, Bioinformatics
