2 votes

Cross-Product Extensions of the Gene Ontology

Christopher J. Mungall¹, Michael Bada², Tanya Z. Berardini³, Jennifer Deegan⁴, Amelia Ireland⁴, Midori A. Harris⁴, David P. Hill⁵ & Jane Lomax⁴

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1. Lawrence Berkeley National Laboratory
2. University of Colorado Denver, Department of Pharmacology
3. Carnegie Institute for Science
4. European Bioinformatics Institute
5. The Jackson Laboratory

DOC (82 KB) PDF (191.2 KB)

Document Type:

Manuscript

Date:

Received 28 July 2009 21:38 UTC; Posted 29 July 2009

Subjects:

Genetics & Genomics, Bioinformatics

Tags:

• gene ontology
• OBO Foundry
• ontology
• logic
• gene

Abstract:

The Gene Ontology is being normalized and extended to include computable logical definitions. These definitions are partitioned into mutually exclusive cross-product sets, many of which reference other OBO Foundry ontologies. The results can be used to reason over the ontology, and to make cross-ontology queries.

Collection:

International Conference on Biomedical Ontology

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License:

This document is licensed to the public under the Creative Commons Attribution 3.0 License

How to cite this document:

Mungall, Christopher, Bada, Michael, Berardini, Tanya, Deegan, Jennifer, Ireland, Amelia, Harris, Midori, Hill, David, and Lomax, Jane. Cross-Product Extensions of the Gene Ontology . Available from Nature Precedings <http://hdl.handle.net/10101/npre.2009.3496.1> (2009)

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