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Genome Network Project: An Integrated Genomic Platform

Jose C. Clemente¹, So Nakagawa¹, Kazuho Ikeo¹ & Takashi Gojobori¹

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1. National Institute of Genetics, Japan

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Document Type:

Poster

Date:

Received 27 April 2009 05:40 UTC; Posted 28 April 2009

Subjects:

Genetics & Genomics, Bioinformatics

Tags:

• protein-protein interactions
• transcriptome
• gene interactions
• Genome Network Project
• genome database
• visulaization
• genomics

Abstract:

With the objective of elucidating the structure of gene interactions in the human genome, the Genome Network Project has generated a vast quantity of experimental data, mainly focusing on transcriptional control and transcription-factor related protein-protein interactions (PPI). This data has been collected and organized into the Genome Network Platform (http://genomenetwork.nig.ac.jp/) at the National Institute of Genetics. Expression data was obtained through CAGE (Cap Analysis Gene Expression), qRT-PCR, tiling array, microarray and short RNA analysis, while PPI information was gathered through yeast two hybrid (Y2H), mammalian two hybrid (M2H) and in vitro virus (IVV) methods. The Genome Network Platform Viewer provides an integrated user interface to the complete database, including services of gene search, whole genome browsing, PPI network viewer, and expression profile analysis. Our platform represents an extremely useful resource for researchers in the field of genomics, and provides access to high quality data through the combination of intuitive browsing and visualization capabilities.

Collection:

3rd International Biocuration Conference

Presented at:

3rd International Biocuration Conference, 16 April 2009

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License:

This document is licensed to the public under the Creative Commons Attribution 3.0 License

How to cite this document:

Clemente, Jose, Nakagawa, So, Ikeo, Kazuho, and Gojobori, Takashi. Genome Network Project: An Integrated Genomic Platform. Available from Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3180.1> (2009)

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