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Curation of NISEED, an integrative framework for the digital representation of embryonic development

Delphine Dauga¹, Olivier Tassy¹, Fabrice Daian¹, Daniel Sobral¹ & Patrick Lemaire¹

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1. IBDML,CNRS, UMR6216 CNRS, Campus de Luminy-Case 907, Marseille Cedex 09, France

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Document Type:

Poster

Date:

Received 24 April 2009 09:22 UTC; Posted 24 April 2009

Subjects:

Developmental Biology, Genetics & Genomics, Bioinformatics

Tags:

• database curation
• annotation data
• expression patterns
• genomic data
• ascidian
• marine invertebrate chordates
• database
• biocuration
• curation

Abstract:

NISEED (Network for In situ Expression and Embryological Data) is a generic infrastructure for the creation, maintenance and integration of molecular and anatomical information on model organisms. We applied it to ascidians which are marine invertebrate chordates. These animals constitute model organisms of choice for developmental biology because their embryos develop with a small number of cells and an invariant lineage, allowing their study with a cellular level of resolution. In ANISEED (Ascidian NISEED), embryogenesis of ascidian is represented at the level of the genome via functional gene annotations, cis-regulatory elements or gene expression data, at the level of the cell by representing its morphology, fates, lineage, and relations with its neighbors, or at the level of the whole embryo by representing its anatomy and morphogenesis at successive developmental stages. The system provides also tool and standard to enter, annotate, curate and manage data. All results can be accessed through the ANISEED website at http://aniseed-ibdm.univ-mrs.fr

Collection:

3rd International Biocuration Conference

Presented at:

3rd International Biocuration Conference, 18 April 2009

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License:

This document is licensed to the public under the Creative Commons Attribution 3.0 License

How to cite this document:

Dauga, Delphine, Tassy, Olivier, Daian, Fabrice, Sobral, Daniel, and Lemaire, Patrick. Curation of NISEED, an integrative framework for the digital representation of embryonic development. Available from Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3168.1> (2009)

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