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IMGT/GENE-DB: genomic reference sequences for human and mouse IG and TR genes and alleles

Fatena Bellahcene¹, Géraldine Folch¹, Joumana Jabado-Michaloud¹, Chantal Ginestoux¹, Patrice Duroux¹, Véronique Giudicelli¹ & Marie-Paule Lefranc¹

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1. IMGT, the international ImMunoGenetics information system

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Document Type:

Poster

Date:

Received 23 April 2009 13:26 UTC; Posted 23 April 2009

Subjects:

Genetics & Genomics, Immunology, Bioinformatics

Tags:

• T cell receptor
• reference sequence
• Immunoglobulin
• loci
• variable
• diversity
• joining
• constant
• genes
• IMGT/GENE-DB
• gene database
• standardized nomenclature
• alleles
• Human
• mouse
• genomic data
• orphons
• database curation
• biocuration
• IMGT

Abstract:

The immunoglobulin (IG) and T cell receptor (TR) major loci span about 6 Megabases (Mb) of the human genome on chromosomes 2, 7, 14 and 22, and 9 Mb in mouse on chromosomes 6, 12, 13, 14 and 16. There are seven major loci: three IG loci (IGH, IGK, IGL) and four TR loci (TRA, TRB, TRG, TRD), with a distinct repartition of the variable (V), diversity (D), joining (J) and constant (C) genes. The human genome comprises a total number of 608-665 IG and TR genes (371-422 IG and 237-243 TR), depending on the haplotypes, per haploid genome ^{1, 2} of which 531-588 genes are located in the major loci (distributed in 369-418 V, 32 D, 105-109 J and 25-29 C genes). There are also 77 orphons (68 IG and 9 TR) including two processed IG genes, outside the major loci. The number of functional IG and TR genes is 308-356 (136-171 IG and 172-185 TR) per haploid genome. The mouse genome comprises an approximate number of 876 IG and TR genes (624 IG and 252 TR). All these genomic data are available in the IMGT® gene database, IMGT/GENE-DB ³. The major contribution of IMGT/GENE-DB has been to establish, for the first time, a standardized nomenclature of the IG and TR genes and alleles of humans and other vertebrates. In April 2009, IMGT/GENE-DB manages 1999 genes and 3026 alleles.

[1] Lefranc M.-P. and Lefranc G., The Immunoglobulin FactsBook, Academic Press, London, 458 pages (2001).
[2] Lefranc M.-P. and Lefranc G., The T cell receptor FactsBook, Academic Press, London, 398 pages (2001).
[3] Giudicelli V. et al. Nucleic Acids Res., 33, D256-261 (2005).

Collection:

3rd International Biocuration Conference

Presented at:

3rd International Biocuration Conference, 16 April 2009

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This document is licensed to the public under the Creative Commons Attribution 3.0 License

How to cite this document:

Bellahcene, Fatena, Folch, Géraldine, Jabado-Michaloud, Joumana, Ginestoux, Chantal, Duroux, Patrice, Giudicelli, Véronique, and Lefranc, Marie-Paule. IMGT/GENE-DB: genomic reference sequences for human and mouse IG and TR genes and alleles. Available from Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3158.1> (2009)

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