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A Framework for BioCuration Workflows (part II)

Martin Krallinger¹

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1. Spanish National Cancer Research Centre

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Presentation

Date:

Received 22 April 2009 11:21 UTC; Posted 22 April 2009

Subjects:

Bioinformatics

Tags:

• protein-protein interactions
• article classification
• text mining
• biocuration
• databases
• annotation
• workflow
• triage
• BioGRID

Abstract:

This is the second part of the talk ‘A Framework for BioCuration Workflows’, given by Martin Krallinger from the Spanish National Cancer Research Centre at the ‘Text Mining for the BioCuration Workflow’ workshop. The first part was held by Gully APC Burns (USC Information Sciences Institute, USA). This presentation covered some of the main general tasks often shared by existing literature biocuration workflows: Identification of relevant articles, identification and normalization of the actual bio-entities, the extraction of the annotation event and the identification of some evidential support (e.g. experimental evidence). Some of the important aspects, bottlenecks and potential text mining approaches were briefly introduced for each general workflow task. This talk provided a short overview of some of the important aspects to integrate text mining systems into a given biocuration workflow and showed how heterogeneous workflows can be even for a relatively straight forward task such as the identification of curation relevant literature. A more detailed example of the biocuration of protein-protein interactions through the workflow followed by the BioGRID database was presented.

Collection:

3rd International Biocuration Conference

Presented at:

3rd International Biocuration Conference, 16 April 2009

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This document is licensed to the public under the Creative Commons Attribution 3.0 License

How to cite this document:

Krallinger, Martin. A Framework for BioCuration Workflows (part II). Available from Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3126.1> (2009)

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