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Analysis of Endocrine Disruption in Southern California Coastal Fish using an Aquatic Multi-Species Microarray

Michael E. Baker¹, Barbara Ruggeri², James Sprague¹, Colleen Eckhardt¹, Jennifer Lapira¹, Ivan Wick¹, Laura Soverchia², Massimo Ubaldi², Alberta M. Polzonetti-Magni², Doris Vidal-Dorsch³, Steven Bay³, Joseph R. Gully⁴, Jesus A. Reyes⁵, Kevin M. Kelley⁵, Daniel Schlenk⁶, Ellen C. Breen¹, Roman Šášik¹ & Gary Hardiman¹

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1. University of California, San Diego
2. University of Camerino
3. Southern California Coastal Water Research Project
4. Los Angeles County Sanitation Districts
5. California State University, Long Beach
6. University of California, Riverside

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Document Type:

Manuscript

Date:

Received 28 January 2009 02:08 UTC; Posted 02 February 2009

Subjects:

Developmental Biology, Ecology, Genetics & Genomics, Earth & Environment

Tags:

• Danio rerio
• endocrine disruptors
• flatfish
• hornyhead turbot
• Multi-species array
• Pleuronichthys verticalis
• microarray
• nonylphenol
• xenobiotics
• xenoestrogens
• zebrafish

Abstract:

BACKGROUND: Endocrine disruptors include plasticizers, pesticides, detergents and pharmaceuticals. Turbot and other flatfish are used to characterize the presence of chemicals in the marine environment. Unfortunately, there are relatively few genes of turbot and other flatfish in GenBank, which limits the use of molecular tools such as microarrays and qRT-PCR to study disruption of endocrine responses in sentinel fish captured by regulatory agencies.
OBJECTIVES: A multi-gene cross species microarray was fabricated as a diagnostic tool to screen the effects of environmental chemicals in fish, for which there is minimal genomic information. The array included genes that are involved in the actions of adrenal and sex steroids, thyroid hormone, and xenobiotic responses. This will provide a sensitive tool for screening for the presence of chemicals with adverse effects on endocrine responses in coastal fish species.
METHODS: A custom multi-species microarray was used to study gene expression in wild hornyhead turbot, collected from polluted and clean coastal waters and in laboratory male zebrafish following exposure to estradiol and 4-nonylphenol. Gene-specific expression in turbot liver was measured by qRT-PCR and correlated to microarray data.
RESULTS: Microarray and qRT-PCR analyses of livers from turbot collected near municipal wastewater discharge areas revealed altered gene expression profiles compared to those from reference areas.
CONCLUSIONS: The agreement between the array data and qRT-PCR analyses validates this multi-species microarray. The microarray measurement of gene expression in zebrafish, which are phylogenetically distant from turbot, indicates that this multi-species microarray will be useful for measuring endocrine responses in other fish.

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This document is licensed to the public under the Creative Commons Attribution 3.0 License

How to cite this document:

Baker, Michael, Ruggeri, Barbara, Sprague, James, Eckhardt, Colleen, Lapira, Jennifer, Wick, Ivan, Soverchia, Laura, Ubaldi, Massimo, Polzonetti-Magni, Alberta, Vidal-Dorsch, Doris, Bay, Steven, Gully, Joseph, Reyes, Jesus, Kelley, Kevin, Schlenk, Daniel, Breen, Ellen, Šášik, Roman, and Hardiman, Gary. Analysis of Endocrine Disruption in Southern California Coastal Fish using an Aquatic Multi-Species Microarray. Available from Nature Precedings <http://hdl.handle.net/10101/npre.2009.2823.1> (2009)

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